usage: happy-plot-preproc [-h] -i INPUT_DIR [-f FROM_INDEX] [-t TO_INDEX]
[-P PREPROCESSORS] [-S PIXEL_SELECTORS]
[-V {DEBUG,INFO,WARNING,ERROR,CRITICAL}]
Plot set of pixels with various pre-processing setups.
optional arguments:
-h, --help show this help message and exit
-i INPUT_DIR, --input_dir INPUT_DIR
Folder containing HAPPy data files (default: None)
-f FROM_INDEX, --from_index FROM_INDEX
The first wavelength index to include (0-based)
(default: 60)
-t TO_INDEX, --to_index TO_INDEX
The last wavelength index to include (0-based)
(default: 189)
-P PREPROCESSORS, --preprocessors PREPROCESSORS
The preprocessors to apply to the data separately; use
"multi-pp" if you need to combine multiple steps.
Either preprocessor command-line(s) or file with one
preprocessor command-line per line. (default: pass-
through multi-pp -p 'derivative -w 15 -d 0 snv'
derivative -w 15 -d 0 sni)
-S PIXEL_SELECTORS, --pixel_selectors PIXEL_SELECTORS
The pixel selectors to use. Either pixel selector
command-line(s) or file with one pixel selector
command-line per line. (default: ps-simple -n 100 -b)
-V {DEBUG,INFO,WARNING,ERROR,CRITICAL}, --logging_level {DEBUG,INFO,WARNING,ERROR,CRITICAL}
The logging level to use. (default: WARN)